publications

publications by categories in reversed chronological order. generated by jekyll-scholar.

2026

  1. BioDMS 2026
    Similarity-Based Load-Balancing for Distributed Genomic Indices
    Woodward Galbraith, Ilgar Mammadov, Shreyaan Pathak, and 2 more authors
    In VLDB 2026 Workshop on Biomedical Data Management Systems (BioDMS), 2026
    PDF
  2. VecDB 2026
    Directional Beam Search: I/O-Efficient ANNS on GPU
    Zikun Wang, Hunter McCoy, and Prashant Pandey
    In VLDB 2026 Workshop: The 2nd Workshop on Vector Databases (VecDB), 2026
    PDF
  3. VecDB 2026
    LOCALE: Local-Alignment Embeddings for Noise-Robust DNA Search at SRA Scale
    Ryan P. Synk, Prashant Pandey, S. Cenk Sahinalp, and 1 more author
    In VLDB 2026 Workshop: The 2nd Workshop on Vector Databases (VecDB), 2026
    PDF
  4. arXiv 2026
    InferScale: GPU-Native KV Injection for Personalized LLM Serving
    Peter Li and Prashant Pandey
    arXiv preprint arXiv:2607.27090, 2026
    PDF
  5. arXiv 2026
    How to Train Your Filter: Should You Learn, Stack or Adapt?
    Diandre Miguel Sabale, Wolfgang Gatterbauer, and Prashant Pandey
    arXiv preprint arXiv:2602.13484, 2026
    PDF
  6. bioRxiv 2026
    kache-hash: A Dynamic, Concurrent, and Cache-Efficient Hash Table for Streaming k-mer Operations
    Jamshed Khan, Rob Patro, and Prashant Pandey
    bioRxiv, 2026
    PDF
  7. SIGMOD 2026
    Aeris Filter: A Strongly and Monotonically Adaptive Range Filter
    Yuvaraj Chesetti, Navid Eslami, Huanchen Zhang, and 2 more authors
    In ACM Special Interest Group on Management of Data 2026, 2026
    PDF Code
  8. SIGMOD 2026
    To Adapt or Not to Adapt, That is the Ski Question
    Yuvaraj Chesetti and Prashant Pandey
    In ACM Special Interest Group on Management of Data 2026, 2026
    Best of SIGMOD 2026 PDF Code
  9. SIGMOD 2026
    Breadcrumb Filters: Fast Fully Featured Filters
    Andrew Krapivin, Aaditya Rangarajan, Alex Conway, and 3 more authors
    In ACM Special Interest Group on Management of Data 2026, 2026
    PDF Code
  10. VLDB 2026
    GPU-Accelerated ANNS: Quantized for Speed, Built for Change
    Hunter McCoy, Zikun Wang, and Prashant Pandey
    Proc. VLDB Endow., 2026
    PDF Code
  11. RECOMB 2026
    Faster and Scalable Parallel External-Memory Construction of Colored Compacted de Bruijn Graphs with Cuttlefish 3
    Jamshed Khan, Laxman Dhulipala, Prashant Pandey, and 1 more author
    In International Conference on Research in Computational Molecular Biology 2026, 2026
    PDF Code
  12. ALENEX 2026
    WarpSpeed: A High-Performance Library for Concurrent GPU Hash Tables
    Hunter Mccoy and Prashant Pandey
    In SIAM Symposium on Algorithm Engineering and Experiments, 2026
    Best Artifact Award PDF Code

2025

  1. SC 2025
    FaSTCC: Fast Sparse Tensor Contractions on CPUs
    Saurabh Raje, Hunter McCoy, Atanas Rountev, and 2 more authors
    In SC 2025, 2025
    PDF Code
  2. ICPP 2025
    Bridging Cache-Friendliness and Concurrency: A Locality-Optimized In-Memory B-Skiplist
    Yicong Luo, Senhe Hao, Brian Wheatman, and 2 more authors
    In ICPP 2025, 2025
    PDF Code
  3. ACDA 2025
    Evaluating Learned Indexes for External-Memory Joins
    Yuvaraj Chesetti and Prashant Pandey
    In 2025 Proceedings of the Conference on Applied and Computational Discrete Algorithms (ACDA), 2025
    PDF Code
  4. SIGMOD 2025
    Zombie Hashing: Reanimating Tombstones in a Graveyard
    Yuvaraj Chesetti, Benwei Shi, Jeff M. Phillips, and 1 more author
    Proc. ACM Manag. Data, 2025
    DOI PDF Code
  5. SIGMOD 2025
    Adaptive Quotient Filters
    Richard Wen, Hunter McCoy, David Tench, and 6 more authors
    Proc. ACM Manag. Data, 2025
    DOI PDF Code

2024

  1. VLDB 2024
    BYO: A Unified Framework for Benchmarking Large-Scale Graph Containers
    Brian Wheatman, Xiaojun Dong, Zheqi Shen, and 4 more authors
    Proc. VLDB Endow., 2024
    DOI PDF Code
  2. SIGMOD 2024
    Beyond Bloom: A Tutorial on Future Feature-Rich Filters
    Prashant Pandey, Martı́n Farach-Colton, Niv Dayan, and 1 more author
    In Companion of the 2024 International Conference on Management of Data, SIGMOD/PODS 2024, Santiago AA, Chile, June 9-15, 2024, 2024
    DOI PDF
  3. FAST 2024
    IONIA: High-Performance Replication for Modern Disk-based KV Stores
    Yi Xu, Henry Zhu, Prashant Pandey, and 4 more authors
    In 22nd USENIX Conference on File and Storage Technologies, FAST 2024, Santa Clara, CA, USA, February 27-29, 2024, 2024
    PDF Website
  4. PPOPP 2024
    Gallatin: A General-Purpose GPU Memory Manager
    Hunter McCoy and Prashant Pandey
    In Proceedings of the 29th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming, PPoPP 2024, Edinburgh, United Kingdom, March 2-6, 2024, 2024
    DOI PDF Code

2023

  1. VLDB 2023
    BP-tree: Overcoming the Point-Range Operation Tradeoff for In-Memory B-trees
    Helen Xu, Amanda Li, Brian Wheatman, and 2 more authors
    Proc. VLDB Endow., 2023
    DOI PDF Code
  2. SIGMOD 2023
    IcebergHT: High Performance Hash Tables Through Stability and Low Associativity
    Prashant Pandey, Michael A. Bender, Alex Conway, and 4 more authors
    Proc. ACM Manag. Data, 2023
    DOI PDF Code
  3. ACDA 2023
    Singleton Sieving: Overcoming the Memory/Speed Trade-Off in Exascale k-mer Analysis
    Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, and 1 more author
    In SIAM Conference on Applied and Computational Discrete Algorithms, ACDA 2023, Seattle, WA, USA, May 31 - June 2, 2023, 2023
    DOI PDF Code
  4. PPOPP 2023
    High-Performance Filters for GPUs
    Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, and 1 more author
    In Proceedings of the 28th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming, PPoPP 2023, Montreal, QC, Canada, 25 February 2023 - 1 March 2023, 2023
    DOI PDF Code
  5. IPDPS 23
    Communication Optimization for Distributed Execution of Graph Neural Networks
    Süreyya Emre Kurt, Jinghua Yan, Aravind Sukumaran-Rajam, and 2 more authors
    In IEEE International Parallel and Distributed Processing Symposium, IPDPS 2023, St. Petersburg, FL, USA, May 15-19, 2023, 2023
    DOI PDF
  6. APOCS 23
    Distance and Time Sensitive Filters for Similarity Search in Trajectory Datasets
    Madhav Narayan Bhat, Paul Cesaretti, Mayank Goswami, and 1 more author
    In 2023 Symposium on Algorithmic Principles of Computer Systems, APOCS 2023, Florence, Italy, January 25, 2023, 2023
    DOI PDF

2022

  1. Cluster Computing 2022
    Using Advanced Data Structures to Enable Responsive Security Monitoring
    Janet Vorobyeva, Daniel R Delayo, Michael A Bender, and 6 more authors
    Cluster Computing, 2022
    PDF
  2. BIOINFORMATICS 2022
    An Incrementally Updatable and Scalable System for Large-Scale Sequence Search using the Bentley-Saxe Transformation
    Fatemeh Almodaresi, Jamshed Khan, Sergey Madaminov, and 4 more authors
    Bioinformatics, 2022
    PDF Code

2021

  1. Genome Biology 2021
    VariantStore: an index for large-scale genomic variant search
    Prashant Pandey, Yinjie Gao, and Carl Kingsford
    Genome biology, 2021
    PDF Video Code
  2. SIGMOD 2021
    Terrace: A Hierarchical Graph Container for Skewed Dynamic Graphs
    Prashant Pandey, Brian Wheatman, Helen Xu, and 1 more author
    In SIGMOD ’21: International Conference on Management of Data, Virtual Event, China, June 20-25, 2021, 2021
    DOI PDF Video Code
  3. TOPC 2021
    External-Memory Dictionaries in the Affine and PDAM Models
    Michael A. Bender, Alex Conway, Martin Farach-Colton, and 10 more authors
    ACM Trans. Parallel Comput., 2021
    DOI PDF Website
  4. SIGMOD 2021
    Vector Quotient Filters: Overcoming the Time/Space Trade-Off in Filter Design
    Prashant Pandey, Alex Conway, Joe Durie, and 3 more authors
    In SIGMOD ’21: International Conference on Management of Data, Virtual Event, China, June 20-25, 2021, 2021
    DOI PDF Video Code
  5. IPDPS 2021
    Distributed-Memory k-mer Counting on GPUs
    Israt Nisa, Prashant Pandey, Marquita Ellis, and 3 more authors
    In 35th IEEE International Parallel and Distributed Processing Symposium, IPDPS 2021, Portland, OR, USA, May 17-21, 2021, 2021
    DOI Code

2020

  1. SIGMOD 2020, TODS 2021
    Timely Reporting of Heavy Hitters Using External Memory
    Prashant Pandey, Shikha Singh, Michael A. Bender, and 5 more authors
    In Proceedings of the 2020 International Conference on Management of Data, SIGMOD Conference 2020, online conference [Portland, OR, USA], June 14-19, 2020, 2020
    DOI PDF Video Code

2019

  1. SPAA 2019
    Small Refinements to the DAM Can Have Big Consequences for Data-Structure Design
    Michael A. Bender, Alex Conway, Martin Farach-Colton, and 10 more authors
    In The 31st ACM on Symposium on Parallelism in Algorithms and Architectures, SPAA 2019, Phoenix, AZ, USA, June 22-24, 2019, 2019
    DOI PDF Website
  2. ISMB 2019, BIOINFORMATICS 2019
    Locality Sensitive Hashing for the Edit Distance
    Guillaume Marçais, Dan F. DeBlasio, Prashant Pandey, and 1 more author
    Bioinform., 2019
    DOI PDF Code
  3. arXiv 2019
    The Online Event-Detection Problem
    Michael A. Bender, Jonathan W. Berry, Martin Farach-Colton, and 5 more authors
    CoRR, 2019
    PDF
  4. RECOMB 2019, JCB 2020
    An Efficient, Scalable and Exact Representation of High-Dimensional Color Information Enabled via de Bruijn Graph Search Problem
    Fatemeh Almodaresi, Prashant Pandey, Michael Ferdman, and 2 more authors
    In Research in Computational Molecular Biology - 23rd Annual International Conference, RECOMB 2019, Washington, DC, USA, May 5-8, 2019, Proceedings, 2019
    DOI PDF Code

2018

  1. US Patent
    Instructions that Facilitate the Implementation of the Fork System Call in Processes using Software Guard Extensions
    Prashant Pandey, Mona Vij, Somnath Chakrabarti, and 1 more author
    2018
    HTML
  2. ESA 2018
    Buffered Count-Min Sketch on SSD: Theory and Experiments
    Mayank Goswami, Dzejla Medjedovic, Emina Mekic, and 1 more author
    In 26th Annual European Symposium on Algorithms, ESA 2018, August 20-22, 2018, Helsinki, Finland, 2018
    DOI PDF
  3. RECOMB 2018, Cell Systems 2018
    Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
    Prashant Pandey, Fatemeh Almodaresi, Michael A. Bender, and 3 more authors
    In Research in Computational Molecular Biology - 22nd Annual International Conference, RECOMB 2018, Paris, France, April 21-24, 2018, Proceedings, 2018
    PDF Code
  4. US Patent
    Apparatus and Method For Implementing a Forked System Call in a System with a Protected Region
    Prashant Pandey, Mona Vij, Somnath Chakrabarti, and 1 more author
    2018
    HTML

2017

  1. WABI 2017
    Rainbowfish: A Succinct Colored de Bruijn Graph Representation
    Fatemeh Almodaresi, Prashant Pandey, and Rob Patro
    In 17th International Workshop on Algorithms in Bioinformatics, WABI 2017, August 21-23, 2017, Boston, MA, USA, 2017
    DOI PDF Code
  2. ISMB 2017, BIOINFORMATICS 2017
    deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph
    Prashant Pandey, Michael A. Bender, Rob Johnson, and 1 more author
    Bioinform., 2017
    DOI PDF Video Code
  3. BIOINFORMATICS 2017
    Squeakr: An Exact and Approximate K-Mer Counting System
    Prashant Pandey, Michael A. Bender, Rob Johnson, and 1 more author
    Bioinform., 2017
    DOI PDF Code
  4. SIGMOD 2017
    A General-Purpose Counting Filter: Making Every Bit Count
    Prashant Pandey, Michael A. Bender, Rob Johnson, and 1 more author
    In Proceedings of the 2017 ACM International Conference on Management of Data, SIGMOD Conference 2017, Chicago, IL, USA, May 14-19, 2017, 2017
    DOI PDF Code
  5. arXiv 2017
    A Fast X86 Implementation of Select
    Prashant Pandey, Michael A. Bender, and Rob Johnson
    CoRR, 2017
    PDF Code

2016

  1. TOS 2016
    Writes Wrought Right, and Other Adventures in File System Optimization
    Jun Yuan, Yang Zhan, William Jannen, and 11 more authors
    ACM Trans. Storage, 2016
    DOI PDF Code Website
  2. FAST 2016
    Optimizing Every Operation in a Write-Optimized File System
    Jun Yuan, Yang Zhan, William Jannen, and 11 more authors
    In 14th USENIX Conference on File and Storage Technologies, FAST 2016, Santa Clara, CA, USA, February 22-25, 2016, 2016
    Best Paper Award PDF Code Website

2015

  1. TOS 2015
    BetrFS: Write-Optimization in a Kernel File System
    William Jannen, Jun Yuan, Yang Zhan, and 12 more authors
    ACM Trans. Storage, 2015
    DOI PDF Code Website
  2. FAST 2015
    BetrFS: A Right-Optimized Write-Optimized File System
    William Jannen, Jun Yuan, Yang Zhan, and 12 more authors
    In Proceedings of the 13th USENIX Conference on File and Storage Technologies, FAST 2015, Santa Clara, CA, USA, February 16-19, 2015, 2015
    Best Paper Runner-Up PDF Code Website